2024 Treeplyr

Treeplyr

Author: prka

August undefined, 2024

WebOct 30, 2024 · Plotting a time-calibrated phylogeny of extinct and extant taxa. (Top) RevGadgets code for reading in and plotting a time-calibrated phylogeny of extant and extinct bears. We use the theme() function from ggplot2 to add the posterior-probability legend. (Bottom) The maximum sampled-ancestor clade-credibility tree for the bears. WebAn implementation that combines trait data and a phylogenetic tree (or trees) into a single object of class treedata.table. The resulting object can be easily manipulated to simultaneously change the trait- and tree-level sampling. Currently implemented functions allow users to use a data.table syntax when performing operations on the trait dataset …

GitHub - uyedaj/treeplyr: An R package for using dplyr on matched …

Web関数名概略; encoding: Guess and repair faulty symbol encoding. google_form: Make link to google form given user: html: Parse an HTML page. html_form Webtreeplyr. An R package for using dplyr on matched tree and data objects. To install treeplyr directly from github, use the package devtools: remotes::install_github ("uyedaj/treeplyr") crf100 big bore kit

RevGadgets: An R package for visualizing Bayesian ... - besjournals

Webtreeplyr: treeplyr: 'dplyr' Functionality for Matched Tree and Data... treeplyr-defunct: Defunct functions in treeplyr; treeply.treedata: Run a function on the phylogeny of a 'treedata' … WebIn treeplyr: 'dplyr' Functionality for Matched Tree and Data Objects. Description Usage Arguments Value Examples. View source: R/treeplyr_functions.R. Description. Applies a … WebNov 26, 2024 · treedata.table was >400% faster than treeplyr during the initial data/tree matching step ( Fig. 2 ). For instance, combining a dataset with 10 tips to a character matrix of 40 buddy goode cougarville

Treeplyr

Manipulation of Matched Phylogenies and Data using data.table

WebOct 30, 2024 · Statistical phylogenetic methods are the foundation for a wide range of evolutionary and epidemiological studies. However, as these methods grow increasingly complex, users often encounter significant challenges with summarizing, visualizing and communicating their key results. WebFeb 24, 2024 · Check Details. Version: 0.1.10 Check: whether package can be installed Result: WARN Found the following significant warnings: Warning: replacing previous import ...

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WebRT @CRANberriesFeed: CRAN removals: confoundr extdplyr helda JumpeR LARGB MBNMAtime metacore metatools multicolor NobBS PHEindicatormethods starschemar SwimmeR treeplyr wcep #rstats. 01 Mar 2024 09:02:26 Web## A treeplyr treedata object ## The dataset contains 10 traits ## Continuous traits: Binomial Family Genus SVL mass rootmass eyesize ## Discrete traits: Adult_habitat …

WebIn treeplyr: 'dplyr' Functionality for Matched Tree and Data Objects. Description Usage Arguments Value Examples. View source: R/treeplyr_functions.R. Description. This … WebPackage ‘treeplyr’ was removed from the CRAN repository. Formerly available versions can be obtained from the archive. Archived on 2024-03-01 as issues were not corrected …

WebFeb 4, 2024 · Package ‘treeplyr’ October 14, 2024 Type Package Title 'dplyr' Functionality for Matched Tree and Data Objects Version 0.1.10 Date 2024-09-04 Maintainer Josef Uyeda … WebIn treeplyr: 'dplyr' Functionality for Matched Tree and Data Objects. Description Usage Arguments Value Examples. View source: R/treeplyr_functions.R. Description. This …

WebDescription. Reorders a treedata object. Both the tips and the data are automatically reordered to match.

WebFeb 28, 2024 · treeplyr: 'dplyr' Functionality for Matched Tree and Data Objects. Matches phylogenetic trees and trait data, and allows simultaneous manipulation of the tree and … crf1100l africa twin adventure sports es dctWebAn optional argument that specifies the column of data that contains the names to be matched to the tree. By default, it is set to "detect" which finds the column with the most … crf1100l africa twin 2022Webtreeplyr This R package matches phylogenetic trees and trait data, and allows simultaneous manipulation of the tree and data using dplyr. treedata.table buddy good pub co limitedWebFunction for checking whether a treedata object contains only numeric columns and for forcing data columns into numeric format. filterMatrix. Filter a matrix, returning either all … crf 1100l africa twin adventure sports es mtWebHowever, to our knowledge, treeplyr (Uyeda & Harmon, 2024) and tidytree , both based on dplyr (Wickham et al., 2024a; Wickham et al., 2024b), are to our knowledge, the only … buddy goodrich family mattersWebMatches phylogenetic trees and trait data, and allows simultaneous manipulation of the tree and data using 'dplyr'. buddy goodrich showWebMar 1, 2024 · Check Details. Version: 0.1.10 Check: whether package can be installed Result: WARN Found the following significant warnings: Warning: replacing previous import ... buddy golf watch